Basic Information
Locus ID:
Thhalv10012430m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Short Name:
UPL4
Description:
Ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 661532 | 668784 | + | Thhalv10012430m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 171,803.27 Da | 49.45 | 92.30 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1115 | 1541 | 5.72065E-111 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1161 | 1482 | 3.6E-74 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 72 | 537 | 3.84E-37 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1110 | 1482 | 3.14E-88 | IPR035983 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1059 | 1275 | 1.1E-38 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 91 | 541 | 1.9E-51 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1387 | 1486 | 9.9E-27 | - |
| SMART | SM00119 | hect_3 | 1125 | 1543 | 7.5E-84 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1136 | 1482 | 57.668411 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 834 | 864 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_024012665.1 | E3 ubiquitin-protein ligase UPL4 isoform X1 [Eutrema salsugineum] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | V4L977 | HECT-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10012430mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology