Basic Information
Locus ID:
Thhalv10012353m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_7 | 122220 | 124269 | + | Thhalv10012353m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 57,487.87 Da | 49.00 | 84.49 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 432 | 473 | 7.79727E-25 | - |
| Pfam | PF04564 | U-box domain | 429 | 494 | 2.6E-16 | IPR003613 |
| Pfam | PF02854 | MIF4G domain | 33 | 253 | 4.8E-9 | IPR003890 |
| SUPERFAMILY | SSF48371 | ARM repeat | 22 | 203 | 6.43E-18 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 423 | 494 | 6.98E-24 | - |
| Gene3D | G3DSA:1.20.5.1160 | - | 331 | 392 | 5.4E-5 | - |
| Gene3D | G3DSA:1.25.40.180 | - | 20 | 226 | 1.4E-19 | IPR016021 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 427 | 494 | 3.8E-27 | IPR013083 |
| SMART | SM00543 | if4_15 | 29 | 254 | 1.2E-16 | IPR003890 |
| SMART | SM00504 | Ubox_2 | 431 | 494 | 2.3E-28 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 427 | 494 | 39.152836 | IPR003613 |
| Coils | Coil | Coil | 324 | 358 | - | - |
| Coils | Coil | Coil | 394 | 421 | - | - |
| Coils | Coil | Coil | 366 | 386 | - | - |
| Coils | Coil | Coil | 219 | 267 | - | - |
| Coils | Coil | Coil | 282 | 316 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56040.1 | HEAT/U-box domain-containing protein. | 0 |
| RefSeq | XP_006392576.2 | putative U-box domain-containing protein 58 [Eutrema salsugineum] | 0 |
| Q9SGT2 | Putative U-box domain-containing protein 58 OS=Arabidopsis thaliana OX=3702 GN=PUB58 PE=3 SV=3 | 0 | |
| TrEMBL | V4KIY3 | RING-type E3 ubiquitin transferase (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10012353mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G56030.1, AT1G56040.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012353m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g41640.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g025480.2N |
| Poaceae | Oryza coarctata | 1 | Oco11G002870 |