Basic Information
Locus ID:
Thhalv10012307m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
RING-H2 finger protein ATL19
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_7 | 1321717 | 1322250 | - | Thhalv10012307m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 20,043.27 Da | 63.30 | 118.36 | 0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 128 | 171 | 1.6E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 121 | 175 | 7.88E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 87 | 177 | 6.8E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 129 | 170 | 3.7E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 129 | 171 | 11.250026 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53010.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006392843.2 | putative RING-H2 finger protein ATL19 [Eutrema salsugineum] | 0 |
| Q9C919 | Putative RING-H2 finger protein ATL19 OS=Arabidopsis thaliana OX=3702 GN=ATL19 PE=3 SV=1 | 0 | |
| TrEMBL | V4KG29 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10012307mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 2 | pistato.v30160990, pistato.v30161370 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G53010.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012307m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g39570.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g056380.2N |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1613 |