halophFGD

Basic Information

Locus ID: Thhalv10012242m.g.v1.0

Species & Taxonomic ID: Eutrema salsugineum & 72664

Genome Assembly: GCF_000478725.1

Description: F-box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_7	5417887	5421330	+	Thhalv10012242m.g.v1.0

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.94	63,082.84 Da	51.04	71.95	-0.58

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF08268	F-box associated domain	272	393	2.9E-33	IPR013187
Pfam	PF00646	F-box domain	65	105	3.3E-5	IPR001810
SUPERFAMILY	SSF81383	F-box domain	64	134	9.81E-10	IPR036047
SUPERFAMILY	SSF50965	Galactose oxidase, central domain	172	406	4.71E-5	IPR011043
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	187	401	2.8E-47	IPR017451
MobiDBLite	mobidb-lite	consensus disorder prediction	1	24	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	498	543	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	487	543	-	-
Coils	Coil	Coil	502	529	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G47340.2	-
RefSeq	XP_024006462.1	F-box protein At1g47340-like [Eutrema salsugineum]
Swiss-Prot	Q0V7S0	F-box protein At1g47340 OS=Arabidopsis thaliana OX=3702 GN=At1g47340 PE=2 SV=1
TrEMBL	V4JYU9	F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10012242mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	1	Ag5G01648
Asparagaceae	Asparagus officinalis	4	AsparagusV1_07.1660.V1.1, AsparagusV1_07.1661.V1.1 ... AsparagusV1_07.1662.V1.1, AsparagusV1_08.1417.V1.1
Brassicaceae	Arabidopsis thaliana	77	AT1G19160.1, AT1G26510.1, AT1G26515.1, AT1G30920.1 ... AT1G30925.1, AT1G30930.1, AT1G31000.1, AT1G31080.1, AT1G31090.1, AT1G31163.1, AT1G32420.1, AT1G33010.1, AT1G33020.1, AT1G43005.1, AT1G46840.1, AT1G46912.1, AT1G46984.1, AT1G47300.1, AT1G47340.1, AT1G47350.1, AT1G47730.1, AT1G47765.1, AT1G47790.1, AT1G48060.1, AT1G50870.1, AT1G53360.1, AT1G53370.1, AT1G53550.1, AT1G53790.2, AT1G53815.1, AT1G55070.1, AT1G59675.1, AT1G60370.1, AT1G61060.1, AT1G67130.1, AT2G02660.1, AT2G02890.1, AT2G13630.1, AT2G15640.1, AT2G16220.1, AT2G16450.1, AT2G19630.1, AT2G21930.1, AT2G23160.1, AT2G31470.1, AT2G32470.1, AT2G33705.1, AT3G04660.1, AT3G10240.1, AT3G10790.1, AT3G10990.1, AT3G23960.1, AT3G47020.1, AT3G47030.1, AT3G49440.1, AT3G49450.1, AT3G56890.1, AT3G57580.1, AT3G57590.1, AT3G61340.1, AT4G09190.1, AT4G11590.1, AT4G13060.1, AT4G21240.1, AT4G29970.1, AT4G38870.1, AT5G15660.1, AT5G15670.1, AT5G18160.1, AT5G22791.2, AT5G38810.1, AT5G42430.1, AT5G43550.1, AT5G44220.1, AT5G52610.1, AT5G52620.1, AT5G65850.1
Brassicaceae	Eutrema salsugineum	140	Thhalv10000190m.g.v1.0, Thhalv10000202m.g.v1.0 ... Thhalv10000468m.g.v1.0, Thhalv10000505m.g.v1.0, Thhalv10000643m.g.v1.0, Thhalv10002880m.g.v1.0, Thhalv10002973m.g.v1.0, Thhalv10002976m.g.v1.0, Thhalv10003077m.g.v1.0, Thhalv10003313m.g.v1.0, Thhalv10003347m.g.v1.0, Thhalv10003356m.g.v1.0, Thhalv10003391m.g.v1.0, Thhalv10003413m.g.v1.0, Thhalv10005289m.g.v1.0, Thhalv10006428m.g.v1.0, Thhalv10006464m.g.v1.0, Thhalv10007859m.g.v1.0, Thhalv10009303m.g.v1.0, Thhalv10009304m.g.v1.0, Thhalv10009314m.g.v1.0, Thhalv10009316m.g.v1.0, Thhalv10009318m.g.v1.0, Thhalv10009326m.g.v1.0, Thhalv10009341m.g.v1.0, Thhalv10009344m.g.v1.0, Thhalv10009370m.g.v1.0, Thhalv10009377m.g.v1.0, Thhalv10009427m.g.v1.0, Thhalv10009437m.g.v1.0, Thhalv10009439m.g.v1.0, Thhalv10009451m.g.v1.0, Thhalv10009454m.g.v1.0, Thhalv10009507m.g.v1.0, Thhalv10009523m.g.v1.0, Thhalv10009543m.g.v1.0, Thhalv10009572m.g.v1.0, Thhalv10009588m.g.v1.0, Thhalv10009603m.g.v1.0, Thhalv10009610m.g.v1.0, Thhalv10009617m.g.v1.0, Thhalv10009628m.g.v1.0, Thhalv10009630m.g.v1.0, Thhalv10009643m.g.v1.0, Thhalv10009644m.g.v1.0, Thhalv10009646m.g.v1.0, Thhalv10009665m.g.v1.0, Thhalv10009733m.g.v1.0, Thhalv10009740m.g.v1.0, Thhalv10009752m.g.v1.0, Thhalv10009762m.g.v1.0, Thhalv10009794m.g.v1.0, Thhalv10009823m.g.v1.0, Thhalv10009829m.g.v1.0, Thhalv10009854m.g.v1.0, Thhalv10009883m.g.v1.0, Thhalv10009932m.g.v1.0, Thhalv10009934m.g.v1.0, Thhalv10010425m.g.v1.0, Thhalv10010942m.g.v1.0, Thhalv10011009m.g.v1.0, Thhalv10011044m.g.v1.0, Thhalv10011080m.g.v1.0, Thhalv10011121m.g.v1.0, Thhalv10011954m.g.v1.0, Thhalv10011960m.g.v1.0, Thhalv10011962m.g.v1.0, Thhalv10011966m.g.v1.0, Thhalv10011975m.g.v1.0, Thhalv10011993m.g.v1.0, Thhalv10011995m.g.v1.0, Thhalv10012047m.g.v1.0, Thhalv10012059m.g.v1.0, Thhalv10012065m.g.v1.0, Thhalv10012070m.g.v1.0, Thhalv10012082m.g.v1.0, Thhalv10012093m.g.v1.0, Thhalv10012114m.g.v1.0, Thhalv10012144m.g.v1.0, Thhalv10012153m.g.v1.0, Thhalv10012176m.g.v1.0, Thhalv10012180m.g.v1.0, Thhalv10012205m.g.v1.0, Thhalv10012217m.g.v1.0, Thhalv10012242m.g.v1.0, Thhalv10012245m.g.v1.0, Thhalv10012258m.g.v1.0, Thhalv10012264m.g.v1.0, Thhalv10012275m.g.v1.0, Thhalv10012279m.g.v1.0, Thhalv10012287m.g.v1.0, Thhalv10012302m.g.v1.0, Thhalv10012324m.g.v1.0, Thhalv10012341m.g.v1.0, Thhalv10012345m.g.v1.0, Thhalv10012346m.g.v1.0, Thhalv10012359m.g.v1.0, Thhalv10012370m.g.v1.0, Thhalv10012378m.g.v1.0, Thhalv10012379m.g.v1.0, Thhalv10015249m.g.v1.0, Thhalv10015343m.g.v1.0, Thhalv10015360m.g.v1.0, Thhalv10015410m.g.v1.0, Thhalv10015435m.g.v1.0, Thhalv10015621m.g.v1.0, Thhalv10015706m.g.v1.0, Thhalv10015829m.g.v1.0, Thhalv10015870m.g.v1.0, Thhalv10015881m.g.v1.0, Thhalv10015900m.g.v1.0, Thhalv10015925m.g.v1.0, Thhalv10017547m.g.v1.0, Thhalv10017821m.g.v1.0, Thhalv10017831m.g.v1.0, Thhalv10019461m.g.v1.0, Thhalv10019467m.g.v1.0, Thhalv10019504m.g.v1.0, Thhalv10019539m.g.v1.0, Thhalv10019545m.g.v1.0, Thhalv10019719m.g.v1.0, Thhalv10020859m.g.v1.0, Thhalv10021999m.g.v1.0, Thhalv10022001m.g.v1.0, Thhalv10022123m.g.v1.0, Thhalv10022199m.g.v1.0, Thhalv10022230m.g.v1.0, Thhalv10023641m.g.v1.0, Thhalv10023891m.g.v1.0, Thhalv10025406m.g.v1.0, Thhalv10026790m.g.v1.0, Thhalv10026850m.g.v1.0, Thhalv10027150m.g.v1.0, Thhalv10027194m.g.v1.0, Thhalv10027439m.g.v1.0, Thhalv10027600m.g.v1.0, Thhalv10028042m.g.v1.0, Thhalv10028106m.g.v1.0, Thhalv10029328m.g.v1.0, Thhalv10029487m.g.v1.0
Brassicaceae	Schrenkiella parvula	23	Sp1g02140.v2.2, Sp1g24400.v2.2, Sp1g27310.v2.2 ... Sp1g27840.v2.2, Sp1g33140.v2.2, Sp1g34250.v2.2, Sp1g34800.v2.2, Sp1g37610.v2.2, Sp1g37770.v2.2, Sp1g40720.v2.2, Sp3g00660.v2.2, Sp3g03500.v2.2, Sp3g03510.v2.2, Sp3g17210.v2.2, Sp4g14420.v2.2, Sp5g04230.v2.2, Sp5g04240.v2.2, Sp5g12630.v2.2, Sp6g06960.v2.2, Sp6g28450.v2.2, Sp7g04870.v2.2, Sp7g24400.v2.2, SpUn0074_0030.v2.2
Brassicaceae	Brassica nigra	133	BniB01g001870.2N, BniB01g010610.2N, BniB01g010810.2N ... BniB01g010850.2N, BniB01g011630.2N, BniB01g011970.2N, BniB01g011990.2N, BniB01g012020.2N, BniB01g012030.2N, BniB01g012090.2N, BniB01g012190.2N, BniB01g012500.2N, BniB01g012530.2N, BniB01g012540.2N, BniB01g012580.2N, BniB01g012950.2N, BniB01g012960.2N, BniB01g012970.2N, BniB01g021660.2N, BniB01g022210.2N, BniB01g022230.2N, BniB01g039610.2N, BniB01g039740.2N, BniB01g044180.2N, BniB01g050970.2N, BniB01g057440.2N, BniB01g059090.2N, BniB01g059700.2N, BniB02g004780.2N, BniB02g010580.2N, BniB02g014000.2N, BniB02g040900.2N, BniB02g047140.2N, BniB02g047180.2N, BniB02g047200.2N, BniB02g048060.2N, BniB02g054960.2N, BniB03g007790.2N, BniB03g010060.2N, BniB03g016980.2N, BniB03g020820.2N, BniB03g021720.2N, BniB03g021760.2N, BniB03g021770.2N, BniB03g021840.2N, BniB03g021860.2N, BniB03g021870.2N, BniB03g021880.2N, BniB03g034710.2N, BniB03g035320.2N, BniB03g035330.2N, BniB03g044450.2N, BniB03g045100.2N, BniB03g045220.2N, BniB03g045230.2N, BniB03g054750.2N, BniB03g058220.2N, BniB04g020390.2N, BniB04g024890.2N, BniB04g041620.2N, BniB04g041640.2N, BniB04g042790.2N, BniB04g042820.2N, BniB04g048150.2N, BniB04g048180.2N, BniB04g048190.2N, BniB04g048230.2N, BniB04g048270.2N, BniB04g048310.2N, BniB04g048330.2N, BniB04g058760.2N, BniB04g059420.2N, BniB04g059450.2N, BniB04g059480.2N, BniB04g059530.2N, BniB04g063630.2N, BniB04g063660.2N, BniB05g009930.2N, BniB05g014560.2N, BniB05g014640.2N, BniB05g014690.2N, BniB05g015540.2N, BniB05g021300.2N, BniB05g021310.2N, BniB05g023670.2N, BniB05g029010.2N, BniB05g041450.2N, BniB05g041520.2N, BniB05g060990.2N, BniB05g061010.2N, BniB05g063190.2N, BniB05g063210.2N, BniB06g005790.2N, BniB06g010060.2N, BniB06g011060.2N, BniB06g012790.2N, BniB06g020540.2N, BniB06g020770.2N, BniB06g020900.2N, BniB06g021130.2N, BniB06g021210.2N, BniB06g021220.2N, BniB06g021460.2N, BniB06g023660.2N, BniB06g026800.2N, BniB06g027740.2N, BniB06g030160.2N, BniB06g047600.2N, BniB06g048710.2N, BniB06g057550.2N, BniB06g064680.2N, BniB07g009330.2N, BniB07g045510.2N, BniB07g058650.2N, BniB07g059370.2N, BniB08g010950.2N, BniB08g011400.2N, BniB08g020060.2N, BniB08g020740.2N, BniB08g028950.2N, BniB08g028960.2N, BniB08g028980.2N, BniB08g028990.2N, BniB08g035250.2N, BniB08g035280.2N, BniB08g035330.2N, BniB08g043500.2N, BniB08g063050.2N, BniB08g063070.2N, BniB08g063540.2N, BniB08g073170.2N, BniS25022g010.2N, BniS25022g030.2N
Portulacaceae	Portulaca oleracea	2	evm.TU.LG02.1335, evm.TU.LG03.15
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_15_RagTag.21, evm.TU.Scaffold_17_RagTag.985
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-23706, nbisL1-mrna-26307, nbisL1-mrna-30200
Rhizophoraceae	Kandelia candel	1	add.evm.TU.utg000001l.7
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-11705
Salicaceae	Populus euphratica	2	populus_peu06950, populus_peu07295
Solanaceae	Lycium barbarum	22	gene-LOC132600137, gene-LOC132605467, gene-LOC132607283 ... gene-LOC132608325, gene-LOC132611684, gene-LOC132612846, gene-LOC132617929, gene-LOC132619462, gene-LOC132619467, gene-LOC132620162, gene-LOC132620204, gene-LOC132623533, gene-LOC132624756, gene-LOC132628532, gene-LOC132628536, gene-LOC132629295, gene-LOC132629297, gene-LOC132637129, gene-LOC132639897, gene-LOC132639898, gene-LOC132639900, gene-LOC132641865
Solanaceae	Solanum chilense	4	SOLCI002533700, SOLCI002640100, SOLCI003759200 ... SOLCI005659900
Solanaceae	Solanum pennellii	10	gene-LOC107016884, gene-LOC107020295, gene-LOC107030852 ... gene-LOC114075240, gene-LOC114075356, gene-LOC114075587, gene-LOC114075617, gene-LOC114075656, gene-LOC114076467, gene-LOC114076739