Basic Information
Locus ID:
Thhalv10012238m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
positive regulation of bicellular tight junction assembly
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_7 | 5120508 | 5122194 | + | Thhalv10012238m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.79 | 56,436.21 Da | 42.50 | 98.59 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 3 | 39 | 7.5E-7 | IPR001810 |
| Pfam | PF07723 | Leucine Rich Repeat | 163 | 187 | 4.5E-4 | IPR013101 |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 62 | 3.66E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 50 | 1.5E-6 | - |
| SMART | SM00256 | fbox_2 | 7 | 48 | 0.0017 | IPR001810 |
| SMART | SM00579 | 9598neu4hmm | 427 | 497 | 1.6E-21 | IPR006566 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 49 | 10.265807 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48400.2 | - | 0 |
| RefSeq | XP_024006267.1 | F-box/LRR-repeat protein At1g48400 isoform X1 [Eutrema salsugineum] | 0 |
| Q56XW8 | F-box/LRR-repeat protein At1g48400 OS=Arabidopsis thaliana OX=3702 GN=At1g48400 PE=2 SV=2 | 0 | |
| TrEMBL | V4KTI9 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10012238mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 8 | AT1G21990.1, AT1G47920.1, AT1G48390.1, AT1G48400.1 ... |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10012238m.g.v1.0, Thhalv10013291m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g29200.v2.2 |
| Brassicaceae | Brassica nigra | 18 | BniB01g014250.2N, BniB02g013580.2N, BniB02g052700.2N ... |