Basic Information
Locus ID:
Thhalv10012115m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
protein modification by small protein conjugation or removal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_7 | 3605144 | 3605818 | - | Thhalv10012115m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.14 | 25,981.40 Da | 62.37 | 80.49 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 175 | 218 | 4.1E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 165 | 222 | 4.54E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 149 | 221 | 3.1E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 177 | 217 | 1.6E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 177 | 218 | 13.108904 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49220.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_016709459.2 | uncharacterized protein LOC107923822 [Gossypium hirsutum] | 0 |
| P0C034 | RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1 | 0 | |
| TrEMBL | V4KKU7 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10012115mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G74620.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012115m.g.v1.0 |