Basic Information
Locus ID:
Thhalv10012095m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
BEST Arabidopsis thaliana protein match is Cysteine Histidine-rich C1 domain family protein (TAIR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_7 | 10405199 | 10407187 | + | Thhalv10012095m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.12 | 75,623.36 Da | 44.84 | 74.50 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03107 | C1 domain | 176 | 224 | 3.4E-7 | IPR004146 |
| Pfam | PF03107 | C1 domain | 63 | 110 | 8.0E-10 | IPR004146 |
| Pfam | PF03107 | C1 domain | 237 | 279 | 1.2E-10 | IPR004146 |
| Pfam | PF03107 | C1 domain | 371 | 420 | 8.4E-9 | IPR004146 |
| Pfam | PF03107 | C1 domain | 289 | 336 | 3.1E-8 | IPR004146 |
| Pfam | PF03107 | C1 domain | 123 | 168 | 3.4E-10 | IPR004146 |
| Pfam | PF03107 | C1 domain | 536 | 582 | 1.2E-8 | IPR004146 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 315 | 431 | 9.42E-19 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 34 | 110 | 1.67E-14 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 508 | 589 | 1.67E-19 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 201 | 292 | 6.28E-23 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 94 | 170 | 4.34E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 237 | 316 | 1.9E-6 | IPR013083 |
| Gene3D | G3DSA:3.30.60.20 | - | 546 | 583 | 5.2E-6 | - |
| Gene3D | G3DSA:3.30.60.90 | - | 75 | 130 | 6.6E-6 | IPR043145 |
| SMART | SM00249 | PHD_3 | 392 | 454 | 2.3 | IPR001965 |
| SMART | SM00249 | PHD_3 | 23 | 86 | 28.0 | IPR001965 |
| SMART | SM00249 | PHD_3 | 140 | 216 | 24.0 | IPR001965 |
| SMART | SM00249 | PHD_3 | 252 | 311 | 0.016 | IPR001965 |
| SMART | SM00249 | PHD_3 | 553 | 619 | 3.9 | IPR001965 |
| SMART | SM00109 | c1_12 | 238 | 284 | 0.76 | IPR002219 |
| SMART | SM00109 | c1_12 | 483 | 530 | 1.3 | IPR002219 |
| SMART | SM00109 | c1_12 | 290 | 341 | 3.5 | IPR002219 |
| SMART | SM00109 | c1_12 | 126 | 177 | 0.0016 | IPR002219 |
| SMART | SM00109 | c1_12 | 67 | 115 | 0.77 | IPR002219 |
| ProSiteProfiles | PS50081 | Zinc finger phorbol-ester/DAG-type profile. | 125 | 177 | 8.485201 | IPR002219 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22355.1 | Cysteine/Histidine-rich C1 domain family protein. | 0 |
| RefSeq | XP_018474972.1 | PREDICTED: uncharacterized protein LOC108846247 [Raphanus sativus] | 0 |
| Q6NQN8 | Protein VACUOLELESS GAMETOPHYTES OS=Arabidopsis thaliana OX=3702 GN=VLG PE=1 SV=1 | 0 | |
| TrEMBL | V4JZH2 | Phorbol-ester/DAG-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10012095mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg35663, jg8188, jg8412, jg8450, jg8451, jg8457 |
| Apiaceae | Apium graveolens | 5 | Ag10G00884, Ag1G00153, Ag1G00315, Ag8G00374, Ag8G01874 |
| Asteraceae | Flaveria trinervia | 12 | Ftri10G04197, Ftri15G15158, Ftri15G19898, Ftri1G06516 ... |
| Brassicaceae | Arabidopsis thaliana | 35 | AT1G58037.1, AT2G04680.1, AT2G19650.1, AT2G19660.1 ... |
| Brassicaceae | Eutrema salsugineum | 34 | Thhalv10001923m.g.v1.0, Thhalv10002199m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp2g06340.v2.2, Sp5g15690.v2.2, Sp7g01400.v2.2 ... |
| Brassicaceae | Brassica nigra | 39 | BniB01g002950.2N, BniB01g004980.2N, BniB01g026110.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 17 | Ceq01G2298, Ceq02G1953, Ceq03G0083, Ceq03G0113, Ceq03G0190 ... |
| Casuarinaceae | Casuarina glauca | 23 | Cgl01G2601, Cgl01G2602, Cgl01G2604, Cgl03G0217, Cgl03G0218 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 6 | nbisL1-mrna-3679, nbisL1-mrna-5622, nbisL1-mrna-8116 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G17998 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17876 |
| Salicaceae | Populus euphratica | 4 | populus_peu26078, populus_peu26197, populus_peu26198 ... |