Basic Information
Locus ID:
Thhalv10012045m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_7 | 1290113 | 1290472 | - | Thhalv10012045m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 10,038.33 Da | 37.09 | 90.90 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 29 | 65 | 8.2E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 6 | 76 | 1.18E-10 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 82 | 7.2E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 25 | 65 | 1.1E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 32 | 74 | 11.176815 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 32 | 67 | 8.676514 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53090.5 | - | 0 |
| RefSeq | XP_024006037.1 | protein SPA1-RELATED 4 isoform X2 [Eutrema salsugineum] | 0 |
| Q94BM7 | Protein SPA1-RELATED 4 OS=Arabidopsis thaliana OX=3702 GN=SPA4 PE=1 SV=1 | 0 | |
| TrEMBL | V4KJN5 | WD_REPEATS_REGION domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10012045mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology