Basic Information
Locus ID:
Thhalv10011984m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_7 | 1970628 | 1971644 | + | Thhalv10011984m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 20,168.03 Da | 67.75 | 95.34 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 130 | 172 | 7.4E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 129 | 177 | 7.32E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 92 | 176 | 2.9E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 130 | 171 | 1.4E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 130 | 172 | 13.551494 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G51930.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006392979.2 | E3 ubiquitin-protein ligase ATL15 [Eutrema salsugineum] | 0 |
| Q9LQM2 | RING-H2 finger protein ATL81 OS=Arabidopsis thaliana OX=3702 GN=ATL81 PE=2 SV=1 | 0 | |
| TrEMBL | V4MG22 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10011984mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G51930.1, AT5G41430.1, AT5G41440.1, AT5G41450.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10011950m.g.v1.0, Thhalv10011984m.g.v1.0 ... |
| Brassicaceae | Brassica nigra | 2 | BniB06g028750.2N, BniB07g004040.2N |