Basic Information
Locus ID:
Thhalv10011737m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_7 | 2938345 | 2940429 | - | Thhalv10011737m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 28,549.28 Da | 43.56 | 92.70 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 62 | 110 | 1.52375E-18 | - |
| Pfam | PF12906 | RING-variant domain | 62 | 109 | 2.6E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 58 | 113 | 3.81E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 56 | 116 | 9.1E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 61 | 110 | 4.6E-14 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 54 | 116 | 20.349726 | IPR011016 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50440.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_006393150.1 | E3 ubiquitin-protein ligase MARCH2 [Eutrema salsugineum] | 0 |
| TrEMBL | V4MGH9 | RING-CH-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10011737mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology