Basic Information
Locus ID:
Thhalv10011675m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_7 | 289278 | 291279 | - | Thhalv10011675m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.66 | 36,106.36 Da | 49.55 | 67.89 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 42 | 125 | 6.20396E-38 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 221 | 285 | 2.81144E-13 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 225 | 288 | 1.5E-9 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 44 | 125 | 2.5E-14 | IPR001606 |
| SUPERFAMILY | SSF47095 | HMG-box | 220 | 289 | 2.88E-17 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 40 | 132 | 1.31E-24 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 219 | 294 | 9.5E-15 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 32 | 146 | 1.6E-22 | IPR036431 |
| SMART | SM00398 | hmgende2 | 220 | 289 | 6.7E-12 | IPR009071 |
| SMART | SM01014 | ARID_2 | 37 | 125 | 1.1E-25 | - |
| SMART | SM00501 | bright_3 | 41 | 130 | 7.4E-32 | IPR001606 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 40 | 129 | 21.286695 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 221 | 288 | 12.094153 | IPR009071 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13350.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_006392614.1 | high mobility group B protein 10 [Eutrema salsugineum] | 0 |
| Q9LTT3 | High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1 | 0 | |
| TrEMBL | V4JWQ7 | High mobility group B protein 10 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10011675mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology