Basic Information
Locus ID:
Thhalv10011641m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
leucine-rich repeat protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_7 | 2291209 | 2292984 | - | Thhalv10011641m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.21 | 37,674.47 Da | 27.70 | 87.66 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 50 | 312 | 1.8E-39 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 27 | 313 | 9.43E-63 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 34 | 121 | 1.5E-25 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 122 | 326 | 1.8E-48 | - |
| PIRSF | PIRSF000654 | ILK | 28 | 327 | 4.9E-31 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 47 | 318 | 32.993717 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G51620.2 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_006393027.1 | probable LRR receptor-like serine/threonine-protein kinase At1g51820 [Eutrema salsugineum] | 0 |
| Q9LIG2 | Receptor-like protein kinase At3g21340 OS=Arabidopsis thaliana OX=3702 GN=At3g21340 PE=1 SV=1 | 0 | |
| TrEMBL | V4KSH3 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10011641mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G51620.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011641m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g38260.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g058380.2N, BniB06g029140.2N |