Basic Information
Locus ID:
Thhalv10011564m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
E3 Ubiquitin ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_7 | 705974 | 707998 | - | Thhalv10011564m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.45 | 43,407.54 Da | 52.58 | 89.12 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 333 | 379 | 9.0E-12 | - |
| Pfam | PF12483 | E3 Ubiquitin ligase | 154 | 290 | 2.5E-33 | IPR022170 |
| SUPERFAMILY | SSF57850 | RING/U-box | 329 | 378 | 1.66E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 319 | 387 | 1.4E-15 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 335 | 374 | 10.18781 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 81 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54150.1 | E3 Ubiquitin ligase family protein. | 0 |
| RefSeq | XP_006392711.1 | E3 ubiquitin-protein ligase SPL2 [Eutrema salsugineum] | 0 |
| Q9SYH3 | E3 ubiquitin-protein ligase SPL2 OS=Arabidopsis thaliana OX=3702 GN=SPL2 PE=2 SV=1 | 0 | |
| TrEMBL | V4KJE4 | RING-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10011564mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18009 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6736 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028792 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g170020 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2050, Sbi_jg34462 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2718 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002846 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73476, Sgl76997 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007942, gene:ENSEOMG00000035025 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0006240, CQ.Regalona.r1.9BG0006140 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30118270 |
| Apiaceae | Apium graveolens | 2 | Ag9G01062, AgUnG00744 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G008670 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103698953 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1305.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G10847 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G54150.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011564m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g40600.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g054710.2N, BniB07g001720.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0810 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0820 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g10890, gene.Cymno05g12030 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g07380 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4617 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.142 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00009670 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb3G18640, Lb3G18642, Lb7G33954 |
| Poaceae | Echinochloa crus-galli | 2 | AH01.4793, CH01.5364 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0235800, gene-QOZ80_3BG0292310 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0404690.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_070353, gene-QYE76_070418 |
| Poaceae | Oryza coarctata | 2 | Oco05G004400, Oco06G004460 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g08000.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G462400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0101347, Pt_Chr0107647 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G035870, Chr04G002920, Chr07G008290, Chr0G008590 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G489500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG001420, gene_TRIDC4BG050270 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G011000.1, TraesCS4B02G293400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb401910_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-27105, nbis-gene-4337 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g18443, Zma_g4318 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG12.1578, evm.TU.LG19.59, evm.TU.LG24.287 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g25700 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_18_RagTag.731 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-27561 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8927 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8105 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000023l.13 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018891 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7453 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22860 |
| Salicaceae | Populus euphratica | 2 | populus_peu02888, populus_peu33781 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603749 |
| Solanaceae | Solanum chilense | 1 | SOLCI004472900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005454 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.30684_chr10_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0455 |
| Zosteraceae | Zostera marina | 1 | Zosma02g07290.v3.1 |