Basic Information
Locus ID:
Thhalv10011544m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_7 | 2404171 | 2407469 | - | Thhalv10011544m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.59 | 45,253.53 Da | 34.32 | 90.90 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 245 | 375 | 2.0449E-62 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 57 | 219 | 3.4E-42 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 258 | 366 | 1.5E-31 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 100 | 388 | 8.07E-69 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 22 | 240 | 2.1E-62 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 241 | 402 | 6.5E-58 | IPR027417 |
| SMART | SM00487 | ultradead3 | 51 | 248 | 1.1E-52 | IPR014001 |
| SMART | SM00490 | helicmild6 | 285 | 366 | 2.8E-34 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 244 | 402 | 24.998981 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 63 | 233 | 24.699745 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 32 | 60 | 11.104688 | IPR014014 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G51380.1 | DEA(D/H)-box RNA helicase family protein. | 0 |
| RefSeq | XP_006393060.1 | DEAD-box ATP-dependent RNA helicase 34 [Eutrema salsugineum] | 0 |
| Q9C8J1 | DEAD-box ATP-dependent RNA helicase 34 OS=Arabidopsis thaliana OX=3702 GN=RH34 PE=2 SV=2 | 0 | |
| TrEMBL | V4MG86 | DEAD-box ATP-dependent RNA helicase 34 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10011544mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology