Basic Information
Locus ID:
Thhalv10011528m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_7 | 635414 | 637928 | - | Thhalv10011528m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 46,803.10 Da | 41.27 | 91.72 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 43 | 241 | 1.38599E-135 | - |
| CDD | cd18787 | SF2_C_DEAD | 252 | 382 | 2.18399E-60 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 64 | 225 | 1.7E-39 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 265 | 373 | 7.0E-29 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 108 | 393 | 2.18E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 29 | 247 | 2.5E-66 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 248 | 412 | 8.9E-58 | IPR027417 |
| SMART | SM00490 | helicmild6 | 292 | 373 | 2.9E-31 | IPR001650 |
| SMART | SM00487 | ultradead3 | 58 | 255 | 3.0E-55 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 39 | 67 | 10.433057 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 251 | 412 | 25.830544 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 70 | 240 | 28.597933 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 186 | 194 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54270.1 | eif4a-2. member of eIF4A - eukaryotic initiation factor 4A | 0 |
| RefSeq | XP_006392695.1 | eukaryotic initiation factor 4A-1 [Eutrema salsugineum] | 0 |
| P41377 | Eukaryotic initiation factor 4A-2 OS=Arabidopsis thaliana OX=3702 GN=TIF4A-2 PE=1 SV=1 | 0 | |
| TrEMBL | V4MFE2 | Eukaryotic initiation factor 4A-11 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10011528mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology