Basic Information
Locus ID:
Thhalv10011526m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_7 | 739078 | 742382 | + | Thhalv10011526m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.76 | 46,057.08 Da | 49.46 | 65.22 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 59 | 129 | 7.27099E-36 | - |
| CDD | cd12354 | RRM3_TIA1_like | 263 | 338 | 3.82986E-32 | - |
| CDD | cd12619 | RRM2_PUB1 | 143 | 217 | 5.16565E-52 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 59 | 125 | 4.6E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 265 | 322 | 4.3E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 144 | 214 | 3.5E-20 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 54 | 220 | 7.47E-45 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 255 | 347 | 3.36E-20 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 140 | 221 | 4.6E-26 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 240 | 344 | 4.9E-21 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 139 | 1.4E-23 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 58 | 127 | 5.6E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 264 | 334 | 1.2E-14 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 143 | 216 | 2.6E-25 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 263 | 338 | 15.32331 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 57 | 131 | 14.641094 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 142 | 220 | 18.376226 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54080.1 | oligouridylate-binding protein 1A. | 0 |
| RefSeq | XP_006392722.1 | oligouridylate-binding protein 1A [Eutrema salsugineum] | 0 |
| Q9SYG4 | Oligouridylate-binding protein 1A OS=Arabidopsis thaliana OX=3702 GN=UBP1A PE=1 SV=1 | 0 | |
| TrEMBL | V4KRP9 | Oligouridylate-binding protein 1-like OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10011526mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology