Basic Information
Locus ID:
Thhalv10011523m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_7 | 5123075 | 5125429 | + | Thhalv10011523m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.02 | 48,004.31 Da | 60.30 | 66.20 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 339 | 362 | 6.7E-6 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 300 | 328 | 1.9E-7 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 334 | 368 | 3.92E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 297 | 327 | 1.02E-5 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 331 | 369 | 1.3E-12 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 370 | 402 | 1.7E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 296 | 330 | 1.7E-11 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 257 | 292 | 1.2E-7 | - |
| SMART | SM00547 | zf_4 | 374 | 398 | 0.036 | IPR001876 |
| SMART | SM00547 | zf_4 | 341 | 365 | 8.9E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 302 | 326 | 6.2E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 265 | 289 | 0.023 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 300 | 329 | 9.698511 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 263 | 292 | 8.264401 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 339 | 368 | 10.048569 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 372 | 401 | 9.608173 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 376 | 395 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 267 | 286 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 343 | 362 | - | IPR001876 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_024006193.1 | zinc finger protein VAR3, chloroplastic [Eutrema salsugineum] | 0 |
| TrEMBL | V4KHL4 | Zinc finger protein VAR3, chloroplastic OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10011523mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology