Basic Information
Locus ID:
Thhalv10011452m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Glycosyl hydrolases family 28
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_7 | 6407380 | 6410283 | - | Thhalv10011452m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.79 | 51,230.25 Da | 48.93 | 79.35 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 114 | 427 | 1.4E-86 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 78 | 463 | 1.39E-126 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 72 | 457 | 5.2E-118 | IPR012334 |
| SMART | SM00710 | pbh1 | 268 | 289 | 5600.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 291 | 311 | 9700.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 321 | 342 | 13.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 241 | 267 | 320.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 350 | 371 | 1200.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 298 | 311 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_006393479.1 | polygalacturonase At1g48100 [Eutrema salsugineum] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | V4JZ03 | Pectate_lyase_3 domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10011452mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology