Basic Information
Locus ID:
Thhalv10011406m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
AMSH-like ubiquitin thioesterase 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_7 | 4613241 | 4617501 | + | Thhalv10011406m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 57,467.61 Da | 61.81 | 82.56 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 334 | 508 | 3.2193E-109 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 332 | 437 | 1.1E-17 | IPR000555 |
| Pfam | PF08969 | USP8 dimerisation domain | 5 | 104 | 8.2E-11 | IPR015063 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 334 | 464 | 1.44E-20 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 320 | 508 | 4.3E-70 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 2 | 115 | 6.9E-30 | - |
| SMART | SM00232 | pad1_6 | 333 | 461 | 1.4E-17 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 334 | 464 | 30.373423 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 261 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_006393358.1 | AMSH-like ubiquitin thioesterase 1 [Eutrema salsugineum] | 0 |
| Q8VYB5 | AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana OX=3702 GN=AMSH1 PE=2 SV=1 | 0 | |
| TrEMBL | V4KHI5 | MPN domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10011406mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology