Basic Information
Locus ID:
Thhalv10011271m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
strubbelig-receptor family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_7 | 875121 | 879311 | - | Thhalv10011271m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 78,155.41 Da | 38.32 | 87.43 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 30 | 70 | 3.9E-8 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 418 | 687 | 8.8E-39 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 118 | 177 | 9.9E-11 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 96 | 111 | 0.05 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 396 | 688 | 4.51E-68 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 28 | 236 | 4.56E-40 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 29 | 250 | 1.4E-47 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 495 | 708 | 3.4E-52 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 381 | 493 | 6.7E-25 | - |
| SMART | SM00369 | LRR_typ_2 | 95 | 123 | 17.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 141 | 164 | 220.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 165 | 188 | 27.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 189 | 213 | 62.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 416 | 690 | 35.014877 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 191 | 213 | 7.018892 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 422 | 445 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 328 | 355 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 355 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 284 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 700 | 719 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 284 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53730.1 | STRUBBELIG-receptor family 6. | 0 |
| RefSeq | XP_006392758.1 | protein STRUBBELIG-RECEPTOR FAMILY 6 [Eutrema salsugineum] | 0 |
| Q9C8M9 | Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana OX=3702 GN=SRF6 PE=1 SV=1 | 0 | |
| TrEMBL | V4KFW4 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10011271mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology