Basic Information
Locus ID:
Thhalv10011249m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_7 | 1294542 | 1297800 | - | Thhalv10011249m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 89,269.88 Da | 53.42 | 82.42 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 656 | 688 | 0.009 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 566 | 604 | 2.1E-5 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 39 | 271 | 3.81E-18 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 480 | 790 | 8.25E-52 | IPR036322 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 66 | 278 | 4.2E-24 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 457 | 793 | 3.6E-119 | IPR015943 |
| SMART | SM00320 | WD40_4 | 650 | 688 | 2.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 476 | 511 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 752 | 791 | 39.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 522 | 561 | 50.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 607 | 646 | 0.56 | IPR001680 |
| SMART | SM00320 | WD40_4 | 697 | 736 | 0.84 | IPR001680 |
| SMART | SM00320 | WD40_4 | 564 | 604 | 4.2E-7 | IPR001680 |
| SMART | SM00220 | serkin_6 | 20 | 267 | 0.0061 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 571 | 613 | 11.912015 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 657 | 690 | 10.390142 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 267 | 12.852766 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 657 | 690 | 12.480124 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 571 | 608 | 9.282875 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 675 | 689 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 675 | 689 | 3.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 548 | 562 | 3.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 591 | 605 | 3.3E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 164 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53090.1 | SPA1-related 4. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants. | 0 |
| RefSeq | XP_006392834.2 | protein SPA1-RELATED 4 isoform X1 [Eutrema salsugineum] | 0 |
| Q94BM7 | Protein SPA1-RELATED 4 OS=Arabidopsis thaliana OX=3702 GN=SPA4 PE=1 SV=1 | 0 | |
| TrEMBL | V4JXD4 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10011249mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology