Basic Information
Locus ID:
Thhalv10011211m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
SNF2 domain-containing protein helicase domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_7 | 2949150 | 2953584 | - | Thhalv10011211m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.51 | 105,998.51 Da | 44.27 | 80.05 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 220 | 558 | 2.40941E-86 | - |
| CDD | cd18793 | SF2_C_SNF | 811 | 915 | 9.51528E-54 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 672 | 714 | 1.1E-6 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 808 | 906 | 7.0E-15 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 237 | 636 | 1.8E-68 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 566 | 963 | 4.81E-56 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 665 | 730 | 1.14E-11 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 202 | 558 | 2.76E-47 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 657 | 722 | 9.9E-13 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 573 | 963 | 2.6E-62 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 314 | 410 | 1.7E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 188 | 282 | 1.4E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 426 | 571 | 7.1E-31 | IPR038718 |
| SMART | SM00490 | helicmild6 | 823 | 906 | 8.4E-17 | IPR001650 |
| SMART | SM00184 | ring_2 | 670 | 711 | 2.1E-4 | IPR001841 |
| SMART | SM00487 | ultradead3 | 216 | 535 | 1.5E-27 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 789 | 959 | 13.601137 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 673 | 712 | 11.987676 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 235 | 520 | 12.734823 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 688 | 697 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 771 | 791 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
| Coils | Coil | Coil | 266 | 286 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_006393155.1 | helicase-like transcription factor CHR28 [Eutrema salsugineum] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | V4MGI3 | Helicase-like transcription factor CHR28 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10011211mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology