Basic Information
Locus ID:
Thhalv10011192m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_7 | 305607 | 309279 | + | Thhalv10011192m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 127,335.43 Da | 32.65 | 95.91 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 306 | 322 | 1.5 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 865 | 1135 | 3.4E-44 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 381 | 403 | 0.098 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 35 | 75 | 3.0E-7 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 670 | 728 | 3.2E-8 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 67 | 370 | 1.73E-45 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 844 | 1137 | 9.04E-75 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 277 | 567 | 1.41E-56 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 637 | 759 | 3.06E-25 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 939 | 1159 | 1.4E-57 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 826 | 938 | 3.6E-37 | - |
| Gene3D | G3DSA:3.30.1490.310 | - | 584 | 641 | 0.0 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 83 | 761 | 0.0 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 102 | 125 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 527 | 551 | 76.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 281 | 305 | 33.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 667 | 691 | 46.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 863 | 1137 | 1.8E-34 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 480 | 503 | 99.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 379 | 403 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 454 | 478 | 210.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 863 | 1140 | 38.378769 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 283 | 306 | 7.049695 | IPR001611 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 986 | 998 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 869 | 892 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1144 | 1169 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1153 | 1169 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55610.1 | BRI1 like. mutant has Altered vascular cell differentiation; LRR Receptor Kinase | 0 |
| RefSeq | XP_024006245.1 | serine/threonine-protein kinase BRI1-like 1 [Eutrema salsugineum] | 0 |
| Q9ZWC8 | Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana OX=3702 GN=BRL1 PE=1 SV=1 | 0 | |
| TrEMBL | V4KRA7 | non-specific serine/threonine protein kinase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10011192mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology