Basic Information
Locus ID:
Thhalv10011170m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_7 | 6463356 | 6488787 | + | Thhalv10011170m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 458,523.75 Da | 45.53 | 87.44 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3140 | 3445 | 1.3E-10 | IPR009543 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2002 | 2170 | 8.0E-12 | IPR009291 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 574 | 803 | 2.5E-37 | IPR031642 |
| Pfam | PF00168 | C2 domain | 2641 | 2750 | 1.0E-5 | IPR000008 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2253 | 2393 | 7.6E-9 | IPR009291 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 139 | 382 | 4.2E-72 | IPR031646 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 115 | 1.1E-31 | IPR026854 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2622 | 2749 | 8.26E-9 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 2623 | 2781 | 2.6E-9 | IPR035892 |
| SMART | SM00239 | C2_3c | 2641 | 2770 | 6.6E-5 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 2619 | 2768 | 11.273897 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1058 | 1076 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 4095 | 4126 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1055 | 1076 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2210 | 2234 | - | - |
| Coils | Coil | Coil | 107 | 127 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_006393484.2 | uncharacterized protein LOC18010485 [Eutrema salsugineum] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1J3IH98 | Putative vacuolar protein sorting-associated protein 13A OS=Noccaea caerulescens OX=107243 GN=MP_TR22354_c0_g1_i1_g.65240 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology