Basic Information
Locus ID:
Thhalv10011169m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_103 | 5 | 1063 | - | Thhalv10011169m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 40,178.44 Da | 47.19 | 71.22 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06606 | STKc_MAPKKK | 61 | 335 | 2.7367E-96 | - |
| Pfam | PF00069 | Protein kinase domain | 91 | 335 | 3.2E-43 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 47 | 340 | 1.8E-56 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 34 | 337 | 2.5E-53 | - |
| SMART | SM00220 | serkin_6 | 61 | 335 | 1.3E-45 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 61 | 335 | 35.594372 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 186 | 198 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 49 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46160.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_006409716.2 | mitogen-activated protein kinase kinase kinase 17, partial [Eutrema salsugineum] | 0 |
| Q9SND6 | Mitogen-activated protein kinase kinase kinase 20 OS=Arabidopsis thaliana OX=3702 GN=MAPKKK20 PE=1 SV=1 | 0 | |
| TrEMBL | V4M4L7 | Protein kinase domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10011169mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 6 | AT2G18530.1, AT3G45670.1, AT3G45790.1, AT3G46140.1 ... |
| Brassicaceae | Eutrema salsugineum | 12 | Thhalv10002766m.g.v1.0, Thhalv10002826m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 8 | Sp5g15460.v2.2, Sp5g15480.v2.2, Sp5g15720.v2.2 ... |
| Brassicaceae | Brassica nigra | 4 | BniB08g058970.2N, BniB08g059000.2N, BniB08g062340.2N ... |