Basic Information
Locus ID:
Thhalv10011016m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
F-box LRR-repeat kelch-repeat protein At1g11620
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_16 | 2716361 | 2717248 | + | Thhalv10011016m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.66 | 34,925.12 Da | 45.09 | 97.40 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 5 | 44 | 9.1E-8 | IPR001810 |
| Pfam | PF07734 | F-box associated | 207 | 286 | 6.2E-18 | IPR006527 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 51 | 4.71E-14 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 78 | 3.8E-6 | - |
| SMART | SM00256 | fbox_2 | 5 | 45 | 4.4E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 105 | 294 | 6.1E-33 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11620.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_006404084.2 | putative F-box/LRR-repeat/kelch-repeat protein At1g11620 [Eutrema salsugineum] | 0 |
| Q9SAB5 | Putative F-box/LRR-repeat/kelch-repeat protein At1g11620 OS=Arabidopsis thaliana OX=3702 GN=At1g11620 PE=4 SV=1 | 0 | |
| TrEMBL | V4LSU5 | F-box domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10011016mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G31510.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10000539m.g.v1.0, Thhalv10011016m.g.v1.0 ... |
| Brassicaceae | Brassica nigra | 5 | BniB02g006350.2N, BniB08g012450.2N, BniB08g064620.2N ... |