halophFGD

Basic Information

Locus ID: Thhalv10010994m.g.v1.0

Species & Taxonomic ID: Eutrema salsugineum & 72664

Genome Assembly: GCF_000478725.1

Description: protein modification by small protein conjugation

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_16	6014887	6015679	+	Thhalv10010994m.g.v1.0

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.09	7,832.09 Da	16.86	88.82	-0.04

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00179	Ubiquitin-conjugating enzyme	16	68	3.6E-18	IPR000608
SUPERFAMILY	SSF54495	UBC-like	12	68	1.55E-21	IPR016135
Gene3D	G3DSA:3.10.110.10	Ubiquitin Conjugating Enzyme	5	68	1.8E-23	IPR016135
ProSiteProfiles	PS50127	Ubiquitin-conjugating (UBC) core domain profile.	1	68	24.61758	IPR000608

KEGG Pathway

KO Term:

K06689 (ubiquitin-conjugating enzyme E2 D [EC:2.3.2.23])

Pathway:

ko04013 (MAPK signaling pathway - fly) map04013 (MAPK signaling pathway - fly) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis) ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G16740.1	ubiquitin-conjugating enzyme 29.
RefSeq	XP_006414907.1	ubiquitin-conjugating enzyme E2-16 kDa [Eutrema salsugineum]
Swiss-Prot	Q9Y2X8	Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens OX=9606 GN=UBE2D4 PE=1 SV=1
TrEMBL	V4LTW8	UBC core domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10010994mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Eutrema salsugineum	40	Thhalv10000486m.g.v1.0, Thhalv10000596m.g.v1.0 ... Thhalv10000614m.g.v1.0, Thhalv10000665m.g.v1.0, Thhalv10001869m.g.v1.0, Thhalv10002156m.g.v1.0, Thhalv10002228m.g.v1.0, Thhalv10002871m.g.v1.0, Thhalv10002909m.g.v1.0, Thhalv10002914m.g.v1.0, Thhalv10003007m.g.v1.0, Thhalv10003047m.g.v1.0, Thhalv10003377m.g.v1.0, Thhalv10003398m.g.v1.0, Thhalv10003410m.g.v1.0, Thhalv10005415m.g.v1.0, Thhalv10005459m.g.v1.0, Thhalv10010994m.g.v1.0, Thhalv10011972m.g.v1.0, Thhalv10012188m.g.v1.0, Thhalv10012195m.g.v1.0, Thhalv10015327m.g.v1.0, Thhalv10015453m.g.v1.0, Thhalv10015713m.g.v1.0, Thhalv10016072m.g.v1.0, Thhalv10017582m.g.v1.0, Thhalv10017952m.g.v1.0, Thhalv10019508m.g.v1.0, Thhalv10022481m.g.v1.0, Thhalv10023800m.g.v1.0, Thhalv10023857m.g.v1.0, Thhalv10026772m.g.v1.0, Thhalv10026805m.g.v1.0, Thhalv10026912m.g.v1.0, Thhalv10028035m.g.v1.0, Thhalv10028306m.g.v1.0, Thhalv10029250m.g.v1.0, Thhalv10029290m.g.v1.0, Thhalv10029324m.g.v1.0, Thhalv10029500m.g.v1.0