Basic Information
Locus ID:
Thhalv10010983m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_16 | 2968344 | 2969063 | - | Thhalv10010983m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.43 | 27,365.48 Da | 38.10 | 85.98 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 177 | 219 | 3.84625E-15 | - |
| Pfam | PF13639 | Ring finger domain | 177 | 219 | 9.9E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 156 | 224 | 1.94E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 134 | 225 | 2.4E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 178 | 218 | 9.6E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 178 | 219 | 13.28594 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13228.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006404136.1 | E3 ubiquitin-protein ligase RNF181 [Eutrema salsugineum] | 0 |
| Q6AXU4 | E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus OX=10116 GN=Rnf181 PE=1 SV=1 | 0 | |
| TrEMBL | V4LP88 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10010983mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G18760.1, AT1G21960.1, AT3G13228.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10009703m.g.v1.0, Thhalv10010983m.g.v1.0 |
| Brassicaceae | Brassica nigra | 7 | BniB03g007820.2N, BniB03g007840.2N, BniB04g033350.2N ... |