Basic Information
Locus ID:
Thhalv10010905m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_16 | 32892 | 34025 | + | Thhalv10010905m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.03 | 43,983.17 Da | 47.62 | 77.19 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 26 | 68 | 6.7E-7 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 213 | 317 | 1.6E-21 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 26 | 84 | 2.09E-9 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 117 | 340 | 1.1E-5 | IPR011043 |
| Gene3D | G3DSA:1.20.1280.50 | - | 25 | 63 | 4.3E-5 | - |
| SMART | SM00256 | fbox_2 | 27 | 67 | 1.4E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 115 | 335 | 1.1E-38 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50220.1 | F-box family protein. | 0 |
| RefSeq | XP_006403410.1 | probable F-box protein At3g56670 [Eutrema salsugineum] | 0 |
| Q9FGS3 | Putative F-box protein At5g50220 OS=Arabidopsis thaliana OX=3702 GN=At5g50220 PE=4 SV=1 | 0 | |
| TrEMBL | V4LY91 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10010905mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G52490.1, AT3G56670.1, AT5G50220.1, AT5G62060.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10002240m.g.v1.0, Thhalv10005381m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g03180.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g016620.2N, BniB01g016630.2N, BniB01g027720.2N ... |