Basic Information
Locus ID:
Thhalv10010904m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_16 | 852578 | 853180 | + | Thhalv10010904m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.67 | 14,282.23 Da | 41.24 | 99.06 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12906 | RING-variant domain | 13 | 61 | 2.0E-9 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 10 | 65 | 4.24E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 71 | 2.1E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 12 | 62 | 5.9E-14 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 5 | 68 | 18.125984 | IPR011016 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37950.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_013633038.1 | PREDICTED: uncharacterized protein LOC106338656 [Brassica oleracea var. oleracea] | 0 |
| TrEMBL | V4LYU7 | RING-CH-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10010904mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology