Basic Information
Locus ID:
Thhalv10010902m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_16 | 300368 | 305413 | - | Thhalv10010902m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.58 | 60,264.68 Da | 40.65 | 97.10 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 344 | 478 | 6.0E-30 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 120 | 178 | 1.6E-7 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 45 | 304 | 2.15E-52 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 312 | 541 | 1.27E-45 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 228 | 333 | 2.1E-19 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 400 | 490 | 4.4E-23 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1 | 227 | 3.1E-49 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 334 | 399 | 1.3E-20 | - |
| SMART | SM00220 | serkin_6 | 321 | 542 | 3.5E-9 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 321 | 542 | 26.548611 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 446 | 458 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G07650.3 | - | 0 |
| RefSeq | XP_020879649.1 | probable LRR receptor-like serine/threonine-protein kinase At1g07650 [Arabidopsis lyrata subsp. lyrata] | 0 |
| C0LGE0 | Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana OX=3702 GN=At1g07650 PE=1 SV=1 | 0 | |
| TrEMBL | V4LYE0 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10010902mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 2 | Ah003262, Ah030228 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010902m.g.v1.0 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9359 |
| Zosteraceae | Zostera marina | 1 | Zosma05g00210.v3.1 |