Basic Information
Locus ID:
Thhalv10010823m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
40s ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_16 | 4549510 | 4551036 | + | Thhalv10010823m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.61 | 13,557.73 Da | 38.64 | 95.00 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 24 | 118 | 6.8E-28 | IPR027486 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 22 | 119 | 2.35E-30 | IPR036838 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 7 | 121 | 6.8E-48 | IPR036838 |
| SMART | SM01403 | Ribosomal_S10_2 | 24 | 118 | 2.4E-38 | IPR027486 |
| TIGRFAM | TIGR01046 | uS10_euk_arch: ribosomal protein uS10 | 21 | 119 | 2.3E-40 | IPR005729 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 57 | 72 | 6.8E-14 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 79 | 93 | 6.8E-14 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 22 | 35 | 6.8E-14 | IPR001848 |
| Hamap | MF_00508 | 30S ribosomal protein S10 [rpsJ]. | 20 | 119 | 18.498476 | IPR001848 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45030.1 | Ribosomal protein S10p/S20e family protein. | 0 |
| RefSeq | XP_006404392.1 | 40S ribosomal protein S20-1 [Eutrema salsugineum] | 0 |
| P49200 | Small ribosomal subunit protein uS10z/uS10x OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2 | 0 | |
| TrEMBL | V4L677 | Ribosomal_S10 domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10010823mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology