Basic Information
Locus ID:
Thhalv10010800m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
ubiquitin-conjugating enzyme
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_16 | 1483081 | 1485071 | + | Thhalv10010800m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 16,631.75 Da | 24.71 | 70.82 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 43 | 133 | 1.2E-11 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 11 | 147 | 2.62E-34 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 4 | 147 | 3.4E-40 | IPR016135 |
| SMART | SM00212 | ubc_7 | 16 | 145 | 8.8E-4 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 13 | 147 | 30.289253 | IPR000608 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52560.2 | ubiquitin E2 variant 1D-4. MMZ4/UEV1D encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1D-4, a predicted splice variant, can interact relatively weakly with UBC35/UBC13A and UBC36/UBC13B in a yeast-2-hybrid UEV1D-4 can also significantly, but not totally, functionally complement an mms2 mutation in budding yeast by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS. uev1d-1 mutants are more sensitive than wild type plants to the DNA damaging agent MMS in seed germination and pollen germination assays. | 0 |
| RefSeq | XP_006403794.1 | ubiquitin-conjugating enzyme E2 variant 1D isoform X1 [Eutrema salsugineum] | 0 |
| Q9SVD7 | Ubiquitin-conjugating enzyme E2 variant 1D OS=Arabidopsis thaliana OX=3702 GN=UEV1D PE=1 SV=1 | 0 | |
| TrEMBL | V4LRY0 | UBC core domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10010800mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology