Basic Information
Locus ID:
Thhalv10010573m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_16 | 1096629 | 1098061 | + | Thhalv10010573m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 33,874.70 Da | 48.09 | 71.99 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 248 | 288 | 1.44937E-25 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 247 | 293 | 2.4E-15 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 248 | 294 | 5.55E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 239 | 305 | 5.7E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 249 | 287 | 5.5E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 249 | 288 | 10.895954 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G53410.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006403692.1 | probable E3 ubiquitin-protein ligase LUL2 [Eutrema salsugineum] | 0 |
| Q9LFH6 | Probable E3 ubiquitin-protein ligase LUL2 OS=Arabidopsis thaliana OX=3702 GN=LUL2 PE=2 SV=1 | 0 | |
| TrEMBL | V4L495 | RING-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10010573mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology