Basic Information
Locus ID:
Thhalv10010518m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_16 | 1278036 | 1281772 | - | Thhalv10010518m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.47 | 38,279.13 Da | 67.99 | 67.05 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16521 | RING-HC_MKRN | 187 | 245 | 3.68082E-17 | - |
| Pfam | PF14608 | RNA-binding, Nab2-type zinc finger | 279 | 301 | 0.0011 | - |
| Pfam | PF18044 | CCCH-type zinc finger | 34 | 53 | 1.8E-8 | IPR041367 |
| Pfam | PF18044 | CCCH-type zinc finger | 6 | 26 | 2.7E-6 | IPR041367 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 187 | 244 | 4.7E-7 | IPR018957 |
| Pfam | PF14608 | RNA-binding, Nab2-type zinc finger | 123 | 142 | 1.0 | - |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 31 | 53 | 1.83E-5 | IPR036855 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 3 | 26 | 1.44E-7 | IPR036855 |
| SUPERFAMILY | SSF57850 | RING/U-box | 177 | 251 | 3.83E-13 | - |
| Gene3D | G3DSA:1.20.120.1350 | - | 1 | 30 | 9.5E-7 | - |
| Gene3D | G3DSA:3.30.1370.210 | - | 31 | 146 | 2.4E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 163 | 279 | 2.3E-10 | IPR013083 |
| SMART | SM00184 | ring_2 | 187 | 244 | 5.5E-7 | IPR001841 |
| SMART | SM00356 | c3hfinal6 | 119 | 144 | 0.019 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 31 | 55 | 1.4E-4 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 1 | 27 | 3.6E-5 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 274 | 302 | 0.37 | IPR000571 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 187 | 245 | 12.341748 | IPR001841 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 1 | 28 | 14.943317 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 274 | 303 | 13.319003 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 29 | 56 | 14.624088 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 118 | 145 | 12.549097 | IPR000571 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 211 | 220 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G08505.1 | zinc finger (CCCH-type/C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_006403739.1 | putative RING-type E3 ubiquitin transferase C3H69 [Eutrema salsugineum] | 0 |
| E0X9N4 | Putative RING-type E3 ubiquitin transferase C3H69 OS=Arabidopsis thaliana OX=3702 GN=At3g63550 PE=3 SV=1 | 0 | |
| TrEMBL | V4LRS7 | RING-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10010518mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg1628, jg29820 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13397 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035726 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g029470 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21782, Sbi_jg22039 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15966 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008583 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl62982, Sgl63081, Sgl67689 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018042, gene:ENSEOMG00000019258 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0016770, CQ.Regalona.r1.2BG0018570 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30230530 |
| Apiaceae | Apium graveolens | 2 | Ag7G01771, Ag9G00830 |
| Arecaceae | Cocos nucifera | 2 | COCNU_12G005470, scaffold021807G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720335 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1290.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G13672 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G08505.2 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10010518m.g.v1.0, Thhalv10021103m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g00020.v2.2, Sp3g06990.v2.2, Sp5g00030.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g019970.2N, BniB03g023650.2N, BniB07g058690.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0516 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g09350 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0088s00012.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g08180 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2530 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.46 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00016834, Pov_00024847, Pov_00030975 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G09743, Lb4G22821 |
| Poaceae | Echinochloa crus-galli | 4 | AH06.1311, AH07.3237, CH06.1489, CH07.3142 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0519080, gene-QOZ80_6BG0471160 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0609850.2, HORVU.MOREX.r3.7HG0675280.2 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_029576 |
| Poaceae | Oryza coarctata | 2 | Oco11G008220, Oco12G008240 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g21390.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G256400, gene-BS78_10G132200 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0203517, Pt_Chr0203546, Pt_Chr0404303, Pt_Chr0404320 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G001720, Chr11G016850, Chr15G005000, Chr21G005790 |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G515300, Tel7E01G409900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG043080, gene_TRIDC6BG050500 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS6A02G282000.2, TraesCS6B02G310500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb252860_P001, Zm00001eb381600_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-28951 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29599 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG12.408, evm.TU.LG16.1562, evm.TU.LG26.104 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g23150 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.331, evm.TU.Scaffold_8_RagTag.1392 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9189 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11425, nbisL1-mrna-7475 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-15263, nbisL1-mrna-6963 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000018l.192, evm.TU.utg000028l.210 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003493, Maker00010415 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-8824, nbisL1-mrna-9535 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-18762, nbisL1-mrna-20148 |
| Salicaceae | Populus euphratica | 2 | populus_peu01850, populus_peu35965 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132636195, gene-LOC132644584 |
| Solanaceae | Solanum chilense | 2 | SOLCI004155700, SOLCI005562700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008594, gene-LOC107032003 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.2003_chr01_-, gene_12705 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G0021, TC05G1267 |
| Zosteraceae | Zostera marina | 2 | Zosma01g03960.v3.1, Zosma06g16300.v3.1 |