Basic Information
Locus ID:
Thhalv10010389m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_16 | 1544360 | 1545908 | + | Thhalv10010389m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 49,106.78 Da | 50.93 | 100.64 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 11 | 54 | 7.3217E-23 | - |
| Pfam | PF04564 | U-box domain | 7 | 76 | 1.4E-21 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 100 | 402 | 1.87E-14 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 80 | 4.95E-28 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 84 | 1.2E-29 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 86 | 415 | 5.8E-12 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 10 | 74 | 7.5E-33 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 6 | 81 | 42.770725 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52450.1 | plant U-box 22. Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_006403803.1 | E3 ubiquitin-protein ligase PUB22 [Eutrema salsugineum] | 0 |
| Q9SVC6 | E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana OX=3702 GN=PUB22 PE=1 SV=1 | 0 | |
| TrEMBL | E4MXT1 | RING-type E3 ubiquitin transferase OS=Eutrema halophilum OX=98038 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology