Basic Information
Locus ID:
Thhalv10010320m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_16 | 472525 | 474496 | + | Thhalv10010320m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 56,645.31 Da | 42.57 | 85.99 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01603 | Protein phosphatase 2A regulatory B subunit (B56 family) | 73 | 486 | 2.2E-176 | IPR002554 |
| SUPERFAMILY | SSF48371 | ARM repeat | 87 | 468 | 2.67E-149 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 81 | 485 | 1.2E-178 | IPR011989 |
| PIRSF | PIRSF028043 | PP2A_B56 | 3 | 491 | 3.0E-226 | IPR002554 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 60 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03015 (mRNA surveillance pathway)
map03015 (mRNA surveillance pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04113 (Meiosis - yeast)
map04113 (Meiosis - yeast)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54930.1 | Protein phosphatase 2A regulatory B subunit family protein. | 0 |
| RefSeq | XP_006403514.1 | serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' epsilon isoform [Eutrema salsugineum] | 0 |
| Q9SV41 | Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' epsilon isoform OS=Arabidopsis thaliana OX=3702 GN=B'EPSILON PE=2 SV=1 | 0 | |
| TrEMBL | V4LR29 | Serine/threonine protein phosphatase 2A regulatory subunit OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10010320mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology