Basic Information
Locus ID:
Thhalv10010282m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_16 | 868746 | 870556 | + | Thhalv10010282m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.18 | 60,207.78 Da | 44.46 | 70.09 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 433 | 519 | 2.3E-29 | IPR032867 |
| Pfam | PF13041 | PPR repeat family | 253 | 298 | 1.3E-8 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 160 | 384 | 6.5E-27 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 254 | 287 | 4.3E-8 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 251 | 285 | 12.33152 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 156 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15690.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_006403629.1 | pentatricopeptide repeat-containing protein At2g15690, mitochondrial [Eutrema salsugineum] | 0 |
| Q9ZQE5 | Pentatricopeptide repeat-containing protein At2g15690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H66 PE=1 SV=2 | 0 | |
| TrEMBL | V4LRJ3 | DYW_deaminase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10010282mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology