Basic Information
Locus ID:
Thhalv10010199m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_16 | 500380 | 503105 | - | Thhalv10010199m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 69,175.03 Da | 35.40 | 100.79 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 251 | 293 | 6.27245E-27 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 458 | 496 | 1.8E-5 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 539 | 578 | 2.0E-4 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 375 | 414 | 2.2E-10 | IPR000225 |
| Pfam | PF04564 | U-box domain | 247 | 317 | 7.6E-21 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 345 | 622 | 2.02E-47 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 247 | 322 | 2.47E-28 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 247 | 320 | 2.9E-28 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 336 | 627 | 9.9E-54 | IPR011989 |
| SMART | SM00185 | arm_5 | 498 | 538 | 270.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 539 | 579 | 0.9 | IPR000225 |
| SMART | SM00185 | arm_5 | 457 | 497 | 5.5 | IPR000225 |
| SMART | SM00185 | arm_5 | 375 | 415 | 1.1E-5 | IPR000225 |
| SMART | SM00185 | arm_5 | 416 | 456 | 4.8 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 250 | 313 | 7.0E-33 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 509 | 551 | 8.8024 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 386 | 428 | 13.1424 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 427 | 469 | 8.5924 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 246 | 320 | 43.566837 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_006403526.1 | U-box domain-containing protein 14 [Eutrema salsugineum] | 0 |
| Q8VZ40 | U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1 | 0 | |
| TrEMBL | V4LML0 | RING-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10010199mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology