Basic Information
Locus ID:
Thhalv10010158m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Legume lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_16 | 1106794 | 1109048 | + | Thhalv10010158m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 77,778.92 Da | 39.90 | 83.89 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 385 | 654 | 1.86725E-94 | - |
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 25 | 245 | 4.05764E-77 | IPR001220 |
| Pfam | PF00139 | Legume lectin domain | 25 | 252 | 5.5E-60 | IPR001220 |
| Pfam | PF00069 | Protein kinase domain | 379 | 594 | 2.9E-52 | IPR000719 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 24 | 251 | 1.91E-61 | IPR013320 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 361 | 687 | 7.69E-84 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 456 | 676 | 1.2E-63 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 350 | 455 | 2.4E-30 | - |
| Gene3D | G3DSA:2.60.120.200 | - | 23 | 255 | 6.5E-66 | - |
| SMART | SM00220 | serkin_6 | 379 | 654 | 2.4E-40 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 379 | 679 | 38.958263 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 499 | 511 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 385 | 408 | - | IPR017441 |
| ProSitePatterns | PS00307 | Legume lectins beta-chain signature. | 134 | 140 | - | IPR019825 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 297 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G53380.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_006403697.1 | L-type lectin-domain containing receptor kinase VIII.1 [Eutrema salsugineum] | 0 |
| Q9LFH9 | L-type lectin-domain containing receptor kinase VIII.1 OS=Arabidopsis thaliana OX=3702 GN=LECRK81 PE=2 SV=1 | 0 | |
| TrEMBL | V4L498 | non-specific serine/threonine protein kinase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10010158mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology