Basic Information
Locus ID:
Thhalv10010104m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_16 | 1023018 | 1028393 | + | Thhalv10010104m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 103,663.33 Da | 40.21 | 95.76 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 154 | 213 | 2.3E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 35 | 71 | 1.4E-9 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 274 | 332 | 1.8E-6 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 616 | 874 | 9.1E-39 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 48 | 394 | 2.38E-53 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 597 | 877 | 5.88E-66 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 296 | 381 | 2.1E-12 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 34 | 192 | 1.2E-40 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 689 | 900 | 4.4E-53 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 588 | 687 | 1.2E-29 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 193 | 295 | 3.9E-27 | IPR032675 |
| SMART | SM00220 | serkin_6 | 614 | 879 | 2.1E-22 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 176 | 200 | 200.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 224 | 251 | 30.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 319 | 343 | 13.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 152 | 175 | 30.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 272 | 297 | 300.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 614 | 879 | 32.612099 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 274 | 295 | 7.095899 | IPR001611 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 727 | 739 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 620 | 642 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G53590.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_024013640.1 | putative leucine-rich repeat receptor-like serine/threonine-protein kinase At3g53590 [Eutrema salsugineum] | 0 |
| Q9LFG1 | Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At3g53590 OS=Arabidopsis thaliana OX=3702 GN=At3g53590 PE=1 SV=2 | 0 | |
| TrEMBL | V4LN06 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10010104mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology