Basic Information
Locus ID:
Thhalv10010085m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Short Name:
UBP26
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_16 | 2898295 | 2904350 | + | Thhalv10010085m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 120,394.08 Da | 52.77 | 79.00 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02668 | Peptidase_C19L | 108 | 442 | 1.06695E-146 | IPR033841 |
| CDD | cd01795 | Ubl_USP48 | 967 | 1064 | 2.09895E-31 | IPR044743 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 108 | 441 | 5.5E-45 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 105 | 444 | 1.18E-78 | IPR038765 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 965 | 1029 | 1.22E-9 | IPR029071 |
| SUPERFAMILY | SSF143791 | DUSP-like | 508 | 594 | 6.41E-10 | IPR035927 |
| Gene3D | G3DSA:3.10.20.90 | - | 940 | 1032 | 1.7E-6 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 739 | 861 | 2.8E-6 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 94 | 444 | 1.1E-80 | - |
| SMART | SM00695 | dusp | 526 | 602 | 8.6E-19 | IPR006615 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 952 | 1026 | 9.460621 | IPR000626 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 107 | 444 | 48.214432 | IPR028889 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 615 | 715 | 9.446287 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 508 | 600 | 10.396233 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 743 | 866 | 11.948583 | IPR006615 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 108 | 123 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 344 | 362 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 389 | 413 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49600.1 | ubiquitin-specific protease 26. Encodes a ubiquitin-specific protease which catalyzes deubiquitination of histone H2B and is required for heterochromatin silencing.Loss of function mutations display autonomous endosperm development and embryo arrest. Loss of function also results in an increase in expression of the PcG complex target gene PHE1. | 0 |
| RefSeq | XP_006404125.1 | ubiquitin carboxyl-terminal hydrolase 26 [Eutrema salsugineum] | 0 |
| Q9SCJ9 | Ubiquitin carboxyl-terminal hydrolase 26 OS=Arabidopsis thaliana OX=3702 GN=UBP26 PE=1 SV=3 | 0 | |
| TrEMBL | V4M082 | ubiquitinyl hydrolase 1 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10010085mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17178 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13044 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034200 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g035690 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20640, Sbi_jg23119 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16977 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009213 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63426, Sgl67905 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000018277, gene:ENSEOMG00000019796 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0012660, CQ.Regalona.r1.2BG0014390 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30136320, pistato.v30180000 |
| Apiaceae | Apium graveolens | 1 | Ag9G02703 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G003650 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708645 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.2796.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G05915 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G49600.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010085m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g12510.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g010130.2N, BniB08g063250.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2222 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2418 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno08g01450, gene.Cymno11g09630 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0436s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g14370, gene.Thate05g04520 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1637 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020522 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G04447, Lb6G31044 |
| Poaceae | Echinochloa crus-galli | 3 | BH05.3495, CH02.684, CH05.3639 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0310280, gene-QOZ80_4BG0341480 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0400350.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_060535 |
| Poaceae | Oryza coarctata | 2 | Oco05G005180, Oco06G005350 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g09260.1, LOC_Os03g09270.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G072200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0105901 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G008620, Chr25G007020, Chr26G011120, Chr30G006930 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G450300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG005350, gene_TRIDC4BG046240 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G038800.2, TraesCS4B02G267000.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb008340_P001, Zm00001eb310400_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-5296, nbis-gene-57040 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21633 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.163, evm.TU.LG15.35 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g03150 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1122 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18724, nbisL1-mrna-9609 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5570 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13111 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.424, evm.TU.utg000018l.598 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012079 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8121 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9819 |
| Salicaceae | Populus euphratica | 3 | populus_peu14749, populus_peu14751, populus_peu32430 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132637467 |
| Solanaceae | Solanum chilense | 1 | SOLCI004126000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015260 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8572 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1150 |
| Zosteraceae | Zostera marina | 1 | Zosma01g10150.v3.1 |