Basic Information
Locus ID:
Thhalv10010027m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 11791678 | 11792649 | + | Thhalv10010027m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.60 | 31,446.74 Da | 59.82 | 88.38 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 4 | 41 | 3.4E-9 | IPR001810 |
| Pfam | PF07734 | F-box associated | 202 | 248 | 1.3E-6 | IPR006527 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 86 | 264 | 3.14E-6 | IPR011043 |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 57 | 2.35E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 40 | 5.9E-6 | - |
| SMART | SM00256 | fbox_2 | 4 | 44 | 1.3E-7 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 95 | 239 | 1.0E-17 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 43 | 11.299088 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11270.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_024007719.1 | LOW QUALITY PROTEIN: F-box protein At1g11270 [Eutrema salsugineum] | 0 |
| Q7X7A9 | F-box protein At1g11270 OS=Arabidopsis thaliana OX=3702 GN=At1g11270 PE=2 SV=1 | 0 | |
| TrEMBL | V4L7H8 | F-box domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10010027mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 15 | AT1G09650.1, AT1G11270.1, AT1G12490.1, AT1G12855.1 ... |
| Brassicaceae | Eutrema salsugineum | 30 | Thhalv10000283m.g.v1.0, Thhalv10002950m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp1g27610.v2.2, Sp2g14700.v2.2, Sp6g09040.v2.2 ... |
| Brassicaceae | Brassica nigra | 27 | BniB01g008490.2N, BniB02g006100.2N, BniB02g006160.2N ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00035511 |