halophFGD

Basic Information

Locus ID: Thhalv10009944m.g.v1.0

Species & Taxonomic ID: Eutrema salsugineum & 72664

Genome Assembly: GCF_000478725.1

Description: ABC transporter E family member

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_5	6002342	6003565	+	Thhalv10009944m.g.v1.0

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.01	38,954.67 Da	36.98	87.34	-0.30

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07734	F-box associated	171	247	9.7E-21	IPR006527
Pfam	PF07734	F-box associated	250	323	9.2E-7	IPR006527
SUPERFAMILY	SSF81383	F-box domain	10	226	1.83E-7	IPR036047
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	109	246	2.3E-16	IPR017451

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K06174 (ATP-binding cassette, sub-family E, member 1)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G24800.1	F-box family protein.
RefSeq	XP_024008003.1	LOW QUALITY PROTEIN: F-box/kelch-repeat protein At1g24800 [Eutrema salsugineum]
Swiss-Prot	P0DI02	F-box/kelch-repeat protein At1g24800 OS=Arabidopsis thaliana OX=3702 GN=At1g24800 PE=2 SV=1
TrEMBL	V4K947	F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10009944mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	24	AT1G24800.1, AT1G24881.1, AT1G25055.1, AT1G25150.1 ... AT1G25211.1, AT1G32140.1, AT1G54550.1, AT1G59680.1, AT1G66490.1, AT1G67450.1, AT1G67455.1, AT2G33655.1, AT3G13680.1, AT3G13820.1, AT3G14030.1, AT3G19880.1, AT3G19890.1, AT3G20030.1, AT3G20400.1, AT3G49510.1, AT3G49520.1, AT4G05080.1, AT4G17200.1, AT5G60560.1
Brassicaceae	Eutrema salsugineum	15	Thhalv10000447m.g.v1.0, Thhalv10002786m.g.v1.0 ... Thhalv10003097m.g.v1.0, Thhalv10009753m.g.v1.0, Thhalv10009944m.g.v1.0, Thhalv10015452m.g.v1.0, Thhalv10019643m.g.v1.0, Thhalv10022026m.g.v1.0, Thhalv10022402m.g.v1.0, Thhalv10023084m.g.v1.0, Thhalv10023095m.g.v1.0, Thhalv10023820m.g.v1.0, Thhalv10023848m.g.v1.0, Thhalv10024142m.g.v1.0, Thhalv10027178m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g11150.v2.2, Sp3g32750.v2.2
Brassicaceae	Brassica nigra	13	BniB01g039260.2N, BniB02g015480.2N, BniB04g007550.2N ... BniB04g047270.2N, BniB05g002470.2N, BniB05g017590.2N, BniB06g018860.2N, BniB06g051530.2N, BniB07g030840.2N, BniB07g031550.2N, BniB07g055480.2N, BniB08g028340.2N, BniB08g067670.2N