Basic Information
Locus ID:
Thhalv10009927m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 13249143 | 13249568 | + | Thhalv10009927m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.17 | 15,504.19 Da | 48.23 | 95.39 | 0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17123 | RING-like zinc finger | 82 | 110 | 2.6E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 81 | 129 | 4.12E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 64 | 131 | 8.4E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 82 | 123 | 1.0E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 82 | 124 | 10.704165 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28920.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_018450567.1 | PREDICTED: probable E3 ubiquitin-protein ligase ATL45 [Raphanus sativus] | 0 |
| Q9SG96 | RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1 | 0 | |
| TrEMBL | V4L1H5 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10009927mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G28920.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10009927m.g.v1.0, Thhalv10023843m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g06310.v2.2, Sp4g11730.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g014960.2N, BniB03g002300.2N |