Basic Information
Locus ID:
Thhalv10009890m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 7475961 | 7477732 | + | Thhalv10009890m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.23 | 44,763.84 Da | 65.37 | 89.34 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 230 | 273 | 5.03576E-22 | - |
| CDD | cd02123 | PA_C_RZF_like | 19 | 162 | 2.54324E-47 | IPR044744 |
| Pfam | PF02225 | PA domain | 58 | 142 | 2.0E-6 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 230 | 273 | 9.2E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 209 | 279 | 2.0E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 190 | 278 | 1.4E-20 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 23 | 158 | 7.3E-23 | - |
| SMART | SM00184 | ring_2 | 231 | 272 | 2.9E-10 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 231 | 273 | 12.710573 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G22670.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_006416173.2 | receptor homology region, transmembrane domain- and RING domain-containing protein 3 [Eutrema salsugineum] | 0 |
| F4I2Y3 | Receptor homology region, transmembrane domain- and RING domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=RMR3 PE=3 SV=1 | 0 | |
| TrEMBL | V4MRY3 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10009890mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology