Basic Information
Locus ID:
Thhalv10009877m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
ubiquitin-conjugating enzyme
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 3508584 | 3509027 | + | Thhalv10009877m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 16,736.21 Da | 36.45 | 86.19 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 5 | 140 | 2.04796E-44 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 7 | 138 | 2.1E-30 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 6 | 145 | 7.24E-38 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 2 | 142 | 1.6E-38 | IPR016135 |
| SMART | SM00212 | ubc_7 | 2 | 145 | 8.4E-28 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 145 | 35.765076 | IPR000608 |
KEGG Pathway
Pathway:
ko04013 (MAPK signaling pathway - fly)
map04013 (MAPK signaling pathway - fly)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04624 (Toll and Imd signaling pathway)
map04624 (Toll and Imd signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13550.1 | Ubiquitin-conjugating enzyme family protein. Encodes a protein similar to ubiquitin-conjugating enzyme (E2) variant proteins (UEV); lacks catalytic cysteine residue found in ubiquitin-conjugating enzyme E2. Represses photomorphogenesis and induces skotomorphogenesis in the dark. | 0 |
| RefSeq | XP_006415316.2 | ubiquitin-conjugating enzyme E2 11 [Eutrema salsugineum] | 0 |
| P51965 | Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens OX=9606 GN=UBE2E1 PE=1 SV=1 | 0 | |
| TrEMBL | V4KQW1 | UBC core domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10009877mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 20 | Thhalv10001269m.g.v1.0, Thhalv10002197m.g.v1.0 ... |