Basic Information
Locus ID:
Thhalv10009860m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 6038069 | 6040845 | + | Thhalv10009860m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 97,357.99 Da | 34.27 | 93.40 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 553 | 819 | 1.16571E-92 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 324 | 361 | 0.0095 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 23 | 55 | 0.0066 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 550 | 817 | 4.2E-45 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 384 | 424 | 1.1E-7 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 323 | 432 | 2.98E-18 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 38 | 297 | 2.55E-38 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 533 | 831 | 3.86E-77 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 23 | 319 | 8.0E-69 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 322 | 448 | 5.2E-33 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 625 | 843 | 1.6E-54 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 515 | 624 | 4.0E-36 | - |
| SMART | SM00220 | serkin_6 | 547 | 827 | 3.7E-41 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 104 | 127 | 5.1 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 387 | 410 | 180.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 128 | 152 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 179 | 202 | 98.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 411 | 433 | 83.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 547 | 823 | 39.735634 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 672 | 684 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 553 | 575 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G24650.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_024008793.1 | receptor-like kinase TMK2 [Eutrema salsugineum] | 0 |
| Q9FYK0 | Receptor-like kinase TMK2 OS=Arabidopsis thaliana OX=3702 GN=TMK2 PE=1 SV=1 | 0 | |
| TrEMBL | V4KSB5 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10009860mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology