Basic Information
Locus ID:
Thhalv10009780m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 11148210 | 11149352 | + | Thhalv10009780m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 41,543.35 Da | 56.96 | 85.32 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 7 | 44 | 1.3E-7 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 210 | 321 | 6.5E-5 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 55 | 1.16E-10 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 167 | 338 | 7.59E-9 | IPR011043 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 47 | 4.7E-7 | - |
| SMART | SM00256 | fbox_2 | 9 | 49 | 6.3E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 104 | 334 | 4.6E-18 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12855.1 | F-box family protein. | 0 |
| RefSeq | XP_024008075.1 | LOW QUALITY PROTEIN: putative F-box/kelch-repeat protein At1g13200, partial [Eutrema salsugineum] | 0 |
| Q9LPW4 | Putative F-box protein At1g12855 OS=Arabidopsis thaliana OX=3702 GN=At1g12855 PE=4 SV=1 | 0 | |
| TrEMBL | V4KW24 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10009780mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 15 | AT1G09650.1, AT1G11270.1, AT1G12490.1, AT1G12855.1 ... |
| Brassicaceae | Eutrema salsugineum | 30 | Thhalv10000283m.g.v1.0, Thhalv10002950m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp1g27610.v2.2, Sp2g14700.v2.2, Sp6g09040.v2.2 ... |
| Brassicaceae | Brassica nigra | 27 | BniB01g008490.2N, BniB02g006100.2N, BniB02g006160.2N ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00035511 |