Basic Information
Locus ID:
Thhalv10009703m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_5 | 9044924 | 9045607 | + | Thhalv10009703m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.42 | 26,057.87 Da | 32.35 | 84.10 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 178 | 220 | 1.8E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 158 | 224 | 8.39E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 117 | 226 | 3.5E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 179 | 219 | 1.8E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 179 | 220 | 13.271187 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13228.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006416568.1 | E3 ubiquitin-protein ligase RNF181 [Eutrema salsugineum] | 0 |
| Q852U6 | Probable E3 ubiquitin-protein ligase RHY1A OS=Arabidopsis thaliana OX=3702 GN=RHY1A PE=1 SV=1 | 0 | |
| TrEMBL | V4MSY8 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10009703mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G18760.1, AT1G21960.1, AT3G13228.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10009703m.g.v1.0, Thhalv10010983m.g.v1.0 |
| Brassicaceae | Brassica nigra | 7 | BniB03g007820.2N, BniB03g007840.2N, BniB04g033350.2N ... |